STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105909441Homeobox protein Nkx-2.2a. (267 aa)    
Predicted Functional Partners:
ENSCHAP00000008000
Neurogenin 3.
   
 0.772
ENSCHAP00000057401
Preproinsulin.
   
 
 0.673
olig2
Oligodendrocyte transcription factor 2.
   
 0.672
neurog1
Neurogenin 1.
   
 0.663
ENSCHAP00000029388
Oligodendrocyte transcription factor 1.
   
 0.639
ENSCHAP00000010514
Neuronal differentiation 1.
   
 0.629
LOC105897039
Hepatocyte nuclear factor 3-beta-like.
   
 
 0.603
LOC105895690
Oligodendrocyte transcription factor 3-like.
   
 0.557
olig3
Oligodendrocyte transcription factor 3.
   
 0.557
sox10
SRY-box transcription factor 10.
   
 
 0.547
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.