STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000025830Synaptonemal complex protein 3. (241 aa)    
Predicted Functional Partners:
ENSCHAP00000044054
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
   
 
 0.933
ENSCHAP00000043106
annotation not available
    
 0.879
ENSCHAP00000005265
annotation not available
  
  
 
0.856
ENSCHAP00000006104
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta.
 
  
 0.801
ENSCHAP00000062081
REC8 meiotic recombination protein b.
    
 0.730
rps23
Ribosomal protein S23.
    
 0.687
LOC105907695
Forkhead box protein P2-like.
     
 0.650
ENSCHAP00000043187
NEDD4 binding protein 2-like 2.
    
  0.625
ENSCHAP00000062509
NEDD4 binding protein 2.
    
  0.625
ENSCHAP00000006175
Structural maintenance of chromosomes 3.
    
 0.603
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.