STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105902753Ubiquitin-conjugating enzyme E2 D4. (147 aa)    
Predicted Functional Partners:
ENSCHAP00000000456
annotation not available
   
 0.999
trip12
Thyroid hormone receptor interactor 12.
   
 0.973
ENSCHAP00000030291
Ubiquitin B.
   
 0.958
stub1
STIP1 homology and U-box containing protein 1.
   
 0.947
anapc11
Anaphase promoting complex subunit 11.
    
 0.943
rps27a
Ribosomal protein S27a.
   
 0.940
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
    
 0.932
rbx1
Ring-box 1.
   
 0.930
ENSCHAP00000054339
annotation not available
    
 0.913
pex12
Peroxisomal biogenesis factor 12.
    
 0.881
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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