STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000026026Kizuna centrosomal protein. (736 aa)    
Predicted Functional Partners:
sclt1
Sodium channel and clathrin linker 1.
    
  0.845
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.739
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.716
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.716
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.687
ENSCHAP00000016391
Macrophage stimulating 1 receptor b.
    
  0.591
ENSCHAP00000041906
Macrophage stimulating 1 receptor a.
    
  0.591
ENSCHAP00000053649
MET proto-oncogene, receptor tyrosine kinase.
    
  0.591
ENSCHAP00000046663
SMC5-SMC6 complex localization factor 1.
   
 0.578
ENSCHAP00000021442
Malignant fibrous histiocytoma amplified sequence 1.
    
 0.553
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.