STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105889691Cold-inducible RNA-binding protein B-like. (207 aa)    
Predicted Functional Partners:
ENSCHAP00000043344
annotation not available
   
0.881
LOC105890375
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.862
ENSCHAP00000054417
Heterogeneous nuclear ribonucleoprotein K.
   
 0.862
sf3b1
Splicing factor 3b subunit 1.
   
 0.841
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.828
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.814
snrnp48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 0.813
zmat5
Zinc finger matrin-type 5.
    
 0.813
phf5a
PHD finger protein 5A.
   
 0.808
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
   
 0.807
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.