STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000026329Lactamase, beta-like 1a. (568 aa)    
Predicted Functional Partners:
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
 0.775
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
  0.650
ENSCHAP00000050145
WD repeat domain 43.
   
 0.594
suox
Sulfite oxidase.
    
  0.590
ENSCHAP00000014119
NOP58 ribonucleoprotein homolog (yeast).
   
  0.577
ENSCHAP00000017872
UTP4 small subunit processome component.
    
 0.574
wdr75
WD repeat domain 75.
   
  0.573
utp15
UTP15 small subunit processome component.
   
  0.572
exosc10
Exosome component 10.
    
  0.565
ENSCHAP00000050426
HEAT repeat containing 1.
    
 0.559
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.