STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gde1Glycerophosphodiester phosphodiesterase 1. (332 aa)    
Predicted Functional Partners:
crls1
Cardiolipin synthase 1.
   
 0.897
pla2g4a
Phospholipase A2 group IVA.
   
 
 0.853
ENSCHAP00000022398
Membrane bound O-acyltransferase domain containing 2a.
   
 
 0.833
LOC105894439
Membrane-bound O-acyltransferase domain-containing protein 2-like.
   
 
 0.833
ENSCHAP00000024746
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 0.790
GPD2
Glycerol-3-phosphate dehydrogenase 2.
  
 0.790
ENSCHAP00000010371
L-2-hydroxyglutarate dehydrogenase.
    
 0.754
ENSCHAP00000038357
Monoglyceride lipase.
    
 0.753
ENSCHAP00000018470
CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).
   
 0.719
ENSCHAP00000002754
Nonhomologous end-joining factor 1.
    
 0.687
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.