STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ackr3Atypical chemokine receptor 3. (364 aa)    
Predicted Functional Partners:
LOC105905820
Stromal cell-derived factor 1-like.
    
 0.974
ENSCHAP00000022916
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).
    
 0.947
LOC105912404
C-X-C chemokine receptor type 4-like.
    
0.901
CXCR4
C-X-C motif chemokine receptor 4.
    
0.901
LOC105908661
Atypical chemokine receptor 3-like.
  
  
 
0.852
atp5f1a
methyl-CpG-binding domain protein 2-like.
    
   0.715
atp5po
ATP synthase peripheral stalk subunit OSCP.
    
   0.707
ENSCHAP00000018535
Arrestin, beta 1.
    
 0.672
LOC105906491
C-C motif chemokine 19-like.
    
 0.655
ENSCHAP00000010918
Chemokine (C-X-C motif) receptor 5.
     
0.654
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.