STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000026912Transient receptor potential cation channel, subfamily M, member 1b. (1898 aa)    
Predicted Functional Partners:
LOC105897688
Serine/threonine-protein phosphatase alpha-2 isoform-like.
    
  0.648
ENSCHAP00000011184
Protein phosphatase 1, catalytic subunit, alpha isozyme b.
    
  0.648
LOC105902522
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit.
    
  0.648
ENSCHAP00000028374
annotation not available
    
  0.648
ENSCHAP00000026254
Sodium channel, voltage-gated, type III, beta.
     
 0.614
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.611
ENSCHAP00000047252
Sodium channel, voltage-gated, type II, beta.
     
 0.610
GNG4
G protein subunit gamma 4.
    
   0.574
ENSCHAP00000031569
Transient receptor potential cation channel, subfamily M, member 2.
     
0.572
gnb2
G protein subunit beta 2.
    
 
 0.569
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.