STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
luc7l3LUC7 like 3 pre-mRNA splicing factor. (474 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.992
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.991
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.991
sf3b1
Splicing factor 3b subunit 1.
   
 0.991
ENSCHAP00000010922
PNN-interacting serine/arginine-rich protein.
   
 
 0.990
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.990
ENSCHAP00000058027
Small nuclear ribonucleoprotein polypeptide C.
    
 0.990
rbm25
RNA binding motif protein 25.
   
 0.982
snrnp70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.982
LOC105896931
RNA-binding protein 25-like.
   
 0.982
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.