STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc117Coiled-coil domain containing 117. (286 aa)    
Predicted Functional Partners:
stip1
Stress induced phosphoprotein 1.
    
   0.842
ENSCHAP00000029918
Ventricular zone expressed PH domain-containing 1.
      
 0.538
slc16a4
Solute carrier family 16 member 4.
      
 0.533
chek2
Checkpoint kinase 2.
      
 0.532
ptafr
Platelet activating factor receptor.
      
 0.523
ggps1
Geranylgeranyl diphosphate synthase 1.
      
 0.445
ENSCHAP00000037010
Adaptor related protein complex 4 subunit epsilon 1.
      
 0.445
ENSCHAP00000015001
Zgc:123010.
    
   0.440
TTC28
Tetratricopeptide repeat domain 28.
    
   0.440
ENSCHAP00000026649
Tetratricopeptide repeat domain 12.
    
   0.440
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.