STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP000000273382-hydroxyacyl-CoA lyase 1. (594 aa)    
Predicted Functional Partners:
ENSCHAP00000019596
Peroxisomal biogenesis factor 5.
 
  
 0.973
ENSCHAP00000056517
Peroxisomal biogenesis factor 5-like a.
 
  
 0.973
ENSCHAP00000000388
Branched chain amino-acid transaminase 2, mitochondrial.
  
 0.939
ENSCHAP00000054617
Branched chain amino-acid transaminase 1, cytosolic.
  
 0.939
bckdha
Branched chain keto acid dehydrogenase E1 subunit alpha.
  
 
 0.938
ENSCHAP00000054064
annotation not available
    
 0.937
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1.
  
 
 0.908
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
  
 
 0.908
ENSCHAP00000043627
HD domain containing 3.
  
 
 0.906
LOC105910395
Uncharacterized LOC105910395.
  
 
 0.886
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.