STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000027344Ras converting CAAX endopeptidase 1a. (320 aa)    
Predicted Functional Partners:
zmpste24
Zinc metallopeptidase STE24.
    
 0.985
ENSCHAP00000061165
OMA1 zinc metallopeptidase.
    
 0.961
icmt
Isoprenylcysteine carboxyl methyltransferase.
   
 0.941
ENSCHAP00000005686
Farnesyltransferase, CAAX box, alpha.
     
 0.931
ENSCHAP00000014219
Farnesyltransferase, CAAX box, beta.
    
 0.912
LOC105909801
Protein farnesyltransferase subunit beta-like.
    
 0.912
churc1
Churchill domain containing 1.
    
 0.881
cog6
Component of oligomeric golgi complex 6.
    
   0.815
ENSCHAP00000023672
Ubiquitin specific peptidase 42.
     
 0.810
CDC25B
Cell division cycle 25B.
     
 0.680
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.