ENSCHAP00000027477 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000027477

annotation not available (987 aa)

Predicted Functional Partners:

man2c1

0.884

ENSCHAP00000037045

0.781

ENSCHAP00000022295

0.609

man2a1

0.609

ENSCHAP00000007944

0.564

ENSCHAP00000014046

0.564

ENSCHAP00000027480

0.503

ENSCHAP00000023324

0.485

ENSCHAP00000014896

0.441

LOC105897611

0.441

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000007944	ENSCHAP00000014046	ENSCHAP00000007944	ENSCHAP00000014046	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	0.850
ENSCHAP00000007944	ENSCHAP00000022295	ENSCHAP00000007944	ENSCHAP00000022295	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	Mannosidase, alpha, class 2A, member 2.	0.919
ENSCHAP00000007944	ENSCHAP00000027477	ENSCHAP00000007944	ENSCHAP00000027477	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	annotation not available	0.564
ENSCHAP00000007944	ENSCHAP00000037045	ENSCHAP00000007944	ENSCHAP00000037045	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b.	0.541
ENSCHAP00000007944	man2a1	ENSCHAP00000007944	ENSCHAP00000051001	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	Mannosidase alpha class 2A member 1.	0.919
ENSCHAP00000014046	ENSCHAP00000007944	ENSCHAP00000014046	ENSCHAP00000007944	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	0.850
ENSCHAP00000014046	ENSCHAP00000022295	ENSCHAP00000014046	ENSCHAP00000022295	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	Mannosidase, alpha, class 2A, member 2.	0.919
ENSCHAP00000014046	ENSCHAP00000027477	ENSCHAP00000014046	ENSCHAP00000027477	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	annotation not available	0.564
ENSCHAP00000014046	ENSCHAP00000037045	ENSCHAP00000014046	ENSCHAP00000037045	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b.	0.541
ENSCHAP00000014046	man2a1	ENSCHAP00000014046	ENSCHAP00000051001	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	Mannosidase alpha class 2A member 1.	0.919
ENSCHAP00000014896	ENSCHAP00000023324	ENSCHAP00000014896	ENSCHAP00000023324	N-acetylgalactosaminidase, alpha.	Mannosidase, beta A, lysosomal.	0.750
ENSCHAP00000014896	ENSCHAP00000027477	ENSCHAP00000014896	ENSCHAP00000027477	N-acetylgalactosaminidase, alpha.	annotation not available	0.441
ENSCHAP00000014896	ENSCHAP00000027480	ENSCHAP00000014896	ENSCHAP00000027480	N-acetylgalactosaminidase, alpha.	Glucuronidase, beta.	0.852
ENSCHAP00000022295	ENSCHAP00000007944	ENSCHAP00000022295	ENSCHAP00000007944	Mannosidase, alpha, class 2A, member 2.	Fucosyltransferase 8b (alpha (1,6) fucosyltransferase).	0.919
ENSCHAP00000022295	ENSCHAP00000014046	ENSCHAP00000022295	ENSCHAP00000014046	Mannosidase, alpha, class 2A, member 2.	Fucosyltransferase 8a (alpha (1,6) fucosyltransferase).	0.919
ENSCHAP00000022295	ENSCHAP00000027477	ENSCHAP00000022295	ENSCHAP00000027477	Mannosidase, alpha, class 2A, member 2.	annotation not available	0.609
ENSCHAP00000022295	ENSCHAP00000037045	ENSCHAP00000022295	ENSCHAP00000037045	Mannosidase, alpha, class 2A, member 2.	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b.	0.924
ENSCHAP00000022295	man2a1	ENSCHAP00000022295	ENSCHAP00000051001	Mannosidase, alpha, class 2A, member 2.	Mannosidase alpha class 2A member 1.	0.853
ENSCHAP00000022295	man2c1	ENSCHAP00000022295	ENSCHAP00000010938	Mannosidase, alpha, class 2A, member 2.	Mannosidase alpha class 2C member 1.	0.821
ENSCHAP00000023324	ENSCHAP00000014896	ENSCHAP00000023324	ENSCHAP00000014896	Mannosidase, beta A, lysosomal.	N-acetylgalactosaminidase, alpha.	0.750