STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000027592SIL1 nucleotide exchange factor. (463 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.999
rps11
Ribosomal protein S11.
  
 0.996
rps3
Ribosomal protein S3.
  
 0.996
pdcd11
Programmed cell death 11.
  
 0.995
ENSCHAP00000040378
Ribosomal protein S3A.
  
 0.995
rpl23a
Ribosomal protein L23a.
  
 0.995
ENSCHAP00000005646
Ribosomal protein L23.
  
 0.994
rpl9
Ribosomal protein L9.
  
 0.994
rps10
Ribosomal protein S10.
   
 0.993
ENSCHAP00000059020
Ribosomal protein S4 X-linked.
  
 0.993
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.