STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000027750annotation not available (245 aa)    
Predicted Functional Partners:
vps28
VPS28 subunit of ESCRT-I.
   
 0.991
ENSCHAP00000048636
annotation not available
   
 0.982
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
    
 0.979
vps25
Vacuolar protein sorting 25 homolog.
    
 0.963
ENSCHAP00000003775
Multivesicular body subunit 12Ba.
   
 0.954
ENSCHAP00000012605
Multivesicular body subunit 12Bb.
   
 0.954
tm9sf1
Transmembrane 9 superfamily member 1.
     
 0.947
ENSCHAP00000005325
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.938
chmp1a
Charged multivesicular body protein 1A.
   
 
 0.936
ENSCHAP00000044860
Charged multivesicular body protein 7.
     
 0.936
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.