STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rttnRotatin. (2281 aa)    
Predicted Functional Partners:
ENSCHAP00000048178
Si:ch211-131k2.3.
     
 0.847
pla2g4a
Phospholipase A2 group IVA.
   
 
 0.817
ENSCHAP00000018213
STIL centriolar assembly protein.
    
 
 0.669
ENSCHAP00000046911
Centrosomal protein 192.
   
  
 0.575
ENSCHAP00000014176
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
 0.571
ENSCHAP00000028313
annotation not available
   
  0.569
ENSCHAP00000015628
annotation not available
    
 
 0.567
ppp1r35
Protein phosphatase 1 regulatory subunit 35.
      
 0.562
ENSCHAP00000022724
Centrosomal protein 85.
      
 0.556
ENSCHAP00000017185
Tyrosine hydroxylase 2.
     
 0.550
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.