STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000027982USP6 N-terminal like. (955 aa)    
Predicted Functional Partners:
RAB19
Ras-related protein Rab-19-like.
    
 0.691
rab43
RAB43, member RAS oncogene family.
    
 0.691
ENSCHAP00000058397
annotation not available
    
 0.691
ENSCHAP00000001768
annotation not available
   
  0.675
ENSCHAP00000002222
RAB guanine nucleotide exchange factor (GEF) 1.
   
  0.675
ENSCHAP00000036095
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
  0.675
rab5c
RAB5C, member RAS oncogene family.
    
 0.631
LOC105893383
Ras-related protein Rab-5B-like.
    
 0.631
LOC105904716
Ras-related protein Rab-5A.
    
 0.631
rab5b
RAB5B, member RAS oncogene family.
    
 0.631
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.