STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdtc1WD and tetratricopeptide repeats 1. (674 aa)    
Predicted Functional Partners:
ENSCHAP00000012285
Damage-specific DNA binding protein 1.
    
 0.996
ENSCHAP00000044410
Cullin 4B.
    
 0.979
ENSCHAP00000019713
WD repeat domain 21.
     
 0.944
ENSCHAP00000050553
WD repeat domain 76.
     
 0.944
ENSCHAP00000025493
WD repeat domain 32.
     
 0.943
ENSCHAP00000060940
DDB1 and CUL4 associated factor 12.
     
 0.940
ENSCHAP00000050211
Ddb1 and cul4 associated factor 6.
    
0.933
dcaf8
DDB1 and CUL4 associated factor 8.
    
0.932
crbn
Cereblon.
     
 0.930
dcaf5
DDB1 and CUL4 associated factor 5.
     
0.927
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.