STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000028122WD repeat domain 47a. (921 aa)    
Predicted Functional Partners:
ENSCHAP00000008462
Calmodulin regulated spectrin-associated protein family, member 2a.
 
 
 
 0.618
ENSCHAP00000028417
Calmodulin regulated spectrin-associated protein family, member 2b.
 
 
 
 0.616
ENSCHAP00000048868
annotation not available
   
 
 0.610
ENSCHAP00000047466
annotation not available
   
 
 0.598
ENSCHAP00000047499
annotation not available
   
 
 0.598
ENSCHAP00000047508
annotation not available
   
 
 0.598
camsap1
Calmodulin regulated spectrin associated protein 1.
 
  
 
 0.563
fbxo33
F-box protein 33.
      
 0.536
ENSCHAP00000015252
WD repeat domain 78.
      
 0.533
rabggtb
Rab geranylgeranyltransferase subunit beta.
      
 0.526
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.