STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000028554Lectin, mannose-binding 2. (361 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.791
TMED2
Transmembrane p24 trafficking protein 2.
   
 0.765
ENSCHAP00000050937
Transmembrane p24 trafficking protein 2.
   
 0.765
ENSCHAP00000013833
SEC23 homolog B, coat complex II component.
   
 0.760
ENSCHAP00000027101
Sec23 homolog A, coat complex II component.
   
 0.760
ENSCHAP00000012046
Si:dkey-9k7.3.
   
 0.746
ENSCHAP00000049098
Lectin, mannose-binding, 1.
    
0.744
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 
 0.726
gosr2
Golgi SNAP receptor complex member 2.
   
 
 0.717
ENSCHAP00000023909
SEC24 homolog B, COPII coat complex component.
    
 0.711
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.