STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105910518UPF0488 protein C8orf33 homolog. (349 aa)    
Predicted Functional Partners:
ENSCHAP00000011215
Glutamate-rich WD repeat containing 1.
   
   0.612
ENSCHAP00000043355
IMP U3 small nucleolar ribonucleoprotein 4.
   
    0.553
LOC105894852
Uncharacterized LOC105894852.
   
   0.545
ENSCHAP00000004434
annotation not available
      
 0.531
ENSCHAP00000024838
annotation not available
      
 0.527
prcc
Proline rich mitotic checkpoint control factor.
      
 0.453
trmt112
tRNA methyltransferase subunit 11-2.
   
  
 0.443
timm29
Translocase of inner mitochondrial membrane 29.
   
  
 0.442
dscc1
DNA replication and sister chromatid cohesion 1.
      
 0.438
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.