STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfc4Replication factor C subunit 4. (357 aa)    
Predicted Functional Partners:
rfc5
Replication factor C subunit 5.
  
0.999
rfc3
Replication factor C subunit 3.
   
0.999
rfc2
Replication factor C subunit 2.
  
0.999
pcna
Proliferating cell nuclear antigen.
  
 0.999
ENSCHAP00000052810
RAD17 checkpoint clamp loader component.
   
 0.999
ENSCHAP00000062264
Replication factor C (activator 1) 1.
   
0.999
ENSCHAP00000011924
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
 0.998
prim1
DNA primase subunit 1.
   
 0.997
rad1
RAD1 checkpoint DNA exonuclease.
   
 0.997
ENSCHAP00000013600
DNA primase subunit 2.
  
 0.995
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.