STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105895722Cysteine string protein-like. (241 aa)    
Predicted Functional Partners:
tfip11
Tuftelin interacting protein 11.
    
 
 0.892
cdc5l
Cell division cycle 5 like.
   
 
 0.885
ENSCHAP00000025604
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.865
ENSCHAP00000016901
Heat shock cognate 70-kd protein, tandem duplicate 3.
 
 0.862
prpf19
pre-mRNA processing factor 19.
    
   0.860
ENSCHAP00000023152
Heat shock protein 9.
 
 0.860
plrg1
Pleiotropic regulator 1.
    
   0.860
HSPA8
Heat shock protein family A (Hsp70) member 8.
 
 0.859
LOC105903789
Heat shock cognate 70 kDa protein.
 
 0.859
ENSCHAP00000042411
Heat shock cognate 70.
 
 0.859
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.