STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000028809SR-related CTD-associated factor 11. (1152 aa)    
Predicted Functional Partners:
ENSCHAP00000043503
THO complex 2.
   
    0.761
ENSCHAP00000008989
ATRX chromatin remodeler.
   
    0.716
ENSCHAP00000027315
NIPBL cohesin loading factor a.
   
  
 0.691
ENSCHAP00000037234
NIPBL cohesin loading factor b.
   
  
 0.691
ENSCHAP00000004933
U2 small nuclear RNA auxiliary factor 2a.
   
 
 0.662
LOC105902020
Splicing factor U2AF 65 kDa subunit-like.
   
 
 0.662
ENSCHAP00000018391
Structural maintenance of chromosomes flexible hinge domain containing 1.
   
    0.635
ENSCHAP00000020409
Structural maintenance of chromosomes 5.
   
    0.618
ENSCHAP00000027239
annotation not available
   
 
 0.603
RSF1
Remodeling and spacing factor 1.
   
    0.585
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.