STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000028950Fraser extracellular matrix complex subunit 1. (3978 aa)    
Predicted Functional Partners:
ENSCHAP00000016350
Fras1 related extracellular matrix 1a.
   
0.926
ENSCHAP00000022264
Fras1 related extracellular matrix 1b.
   
0.926
ENSCHAP00000016743
FRAS1 related extracellular matrix 2b.
   
0.914
ENSCHAP00000043439
Fras1 related extracellular matrix 3.
   
0.914
ENSCHAP00000061056
Nephronectin a.
   
 0.898
ENSCHAP00000042663
Integrin, alpha 2b.
   
 
 0.869
slc8a1
Solute carrier family 8 member A1.
   
0.866
ENSCHAP00000008307
Solute carrier family 8 member 2a.
   
0.866
LOC105894163
Sodium/calcium exchanger 1-like.
   
0.866
ENSCHAP00000010317
Solute carrier family 8 member 4a.
   
 0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.