STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000029177CDC42 binding protein kinase alpha (DMPK-like) a. (1828 aa)    
Predicted Functional Partners:
LOC105894777
Myosin regulatory light chain 2, smooth muscle minor isoform.
    
 0.768
rhof
Ras homolog family member F, filopodia associated.
   
 0.744
ENSCHAP00000026128
Myosin, light chain 7, regulatory.
    
 0.728
ENSCHAP00000027391
WD repeat domain 90.
    
  0.712
LOC105902408
LIM domain kinase 1-like.
    
0.707
limk1
LIM domain kinase 1.
    
0.707
ENSCHAP00000016490
Intersectin 2b.
   
 0.699
ENSCHAP00000057857
Intersectin 2a.
   
 0.699
LOC105889108
Dual specificity testis-specific protein kinase 2-like.
    
 0.690
nsfl1c
NSFL1 cofactor.
    
 0.689
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.