STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1LTranscription elongation regulator 1 like. (607 aa)    
Predicted Functional Partners:
ENSCHAP00000016388
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.982
sf3b1
Splicing factor 3b subunit 1.
   
 0.981
mfap1
Microfibril associated protein 1.
   
 0.978
ENSCHAP00000001746
Splicing factor 3a, subunit 1.
   
  0.977
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
  0.974
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
  0.974
prpf38a
pre-mRNA processing factor 38A.
   
 0.970
zmat2
Zinc finger matrin-type 2.
    
  0.962
ENSCHAP00000025604
Crooked neck pre-mRNA splicing factor 1.
    
  0.958
sf3a2
Splicing factor 3a subunit 2.
    
 0.955
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.