STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
odc1Ornithine decarboxylase 1. (460 aa)    
Predicted Functional Partners:
ENSCHAP00000003858
Danio rerio ornithine decarboxylase antizyme 1a (oaz1a), mRNA.
    
 0.981
ENSCHAP00000028927
Danio rerio ornithine decarboxylase antizyme 1b (oaz1b), mRNA.
    
 0.981
srm
Spermidine synthase.
  
 0.948
LOC105904612
Diamine acetyltransferase 1-like.
    
 0.931
ENSCHAP00000048355
Ornithine decarboxylase antizyme 2b.
    
 0.926
oat
Ornithine aminotransferase.
    
 0.923
arg1
Arginase 1.
  
 
 0.913
arg2
Arginase 2.
  
 
 0.913
ENSCHAP00000000433
Agmatine ureohydrolase (agmatinase).
  
 
 0.898
ENSCHAP00000000460
Agmatine ureohydrolase (agmatinase).
  
 
 0.898
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.