STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000029521Polyhomeotic homolog 2b (Drosophila). (842 aa)    
Predicted Functional Partners:
ENSCHAP00000058832
Bmi1 polycomb ring finger oncogene 1b.
    
 0.831
ENSCHAP00000030621
Chromobox homolog 8b.
    
 0.806
ENSCHAP00000033096
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.806
ENSCHAP00000025498
Chromobox homolog 7b.
    
 0.784
rnf2
Ring finger protein 2.
    
 0.770
LOC105902287
Polycomb group RING finger protein 5-A.
    
 0.765
RING1
Ring finger protein 1.
    
 0.758
cbx2
Chromobox 2.
    
 0.756
ENSCHAP00000011503
Lysine (K)-specific demethylase 2Ab.
    
 0.755
ENSCHAP00000020096
Lysine (K)-specific demethylase 2Ba.
    
 0.755
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.