STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000029628Cyclin and CBS domain divalent metal cation transport mediator 4a. (914 aa)    
Predicted Functional Partners:
gmps
Guanine monophosphate synthase.
  
 
 0.785
ENSCHAP00000054107
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.715
nt5e
5'-nucleotidase ecto.
    
 0.680
LOC105894157
5'-nucleotidase-like.
    
 0.680
aprt
Adenine phosphoribosyltransferase.
  
 
 0.636
ptp4a1
Protein tyrosine phosphatase 4A1.
    
 
 0.614
LOC105912510
Protein tyrosine phosphatase type IVA 2.
    
 
 0.614
ybey
ybeY metalloendoribonuclease.
  
  
 0.593
ENSCHAP00000005497
Protein tyrosine phosphatase 4A3b.
    
 
 0.590
LOC105902033
Protein tyrosine phosphatase type IVA 3-like.
    
 
 0.590
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.