STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000029712POU class 3 homeobox 3b. (448 aa)    
Predicted Functional Partners:
ENSCHAP00000055004
annotation not available
    
  0.658
gtf2b
General transcription factor IIB.
    
 0.606
bsx
Brain specific homeobox.
   
 0.606
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.597
ENSCHAP00000062788
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.566
taf5
TATA-box binding protein associated factor 5.
    
  0.539
taf5l
TATA-box binding protein associated factor 5 like.
    
  0.539
ENSCHAP00000000706
Spalt-like transcription factor 4.
    
 0.535
ENSCHAP00000014609
Spalt-like transcription factor 3b.
    
 0.535
sall1
Spalt like transcription factor 1.
    
 0.535
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.