STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000030141Si:ch211-193k19.1. (978 aa)    
Predicted Functional Partners:
ubqln4
Ubiquilin 4.
    
  0.699
ENSCHAP00000009077
annotation not available
    
  0.672
ENSCHAP00000001221
annotation not available
   
 
 0.669
ENSCHAP00000042429
Adaptor related protein complex 2 subunit mu 1b.
   
 
 0.669
ENSCHAP00000012208
Adaptor related protein complex 2 subunit alpha 1.
    
  0.659
ENSCHAP00000044907
Mannose-6-phosphate receptor (cation dependent).
     
 0.607
scarb2
Scavenger receptor class B member 2.
   
 
  0.601
ENSCHAP00000009922
Synaptotagmin IIa.
   
  0.594
ENSCHAP00000028667
Synaptotagmin Vb.
   
  0.594
syt1
Synaptotagmin 1.
   
  0.594
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.