thyn1 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

thyn1

Thymocyte nuclear protein 1. (234 aa)

Predicted Functional Partners:

LOC105900583

0.866

ENSCHAP00000045160

0.862

ENSCHAP00000011211

0.750

LOC105911849

0.750

ENSCHAP00000057031

0.750

ENSCHAP00000009543

0.725

ENSCHAP00000049557

0.725

blvrb

0.652

ENSCHAP00000038876

0.652

LOC105893824

0.652

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000009543	ENSCHAP00000011211	ENSCHAP00000009543	ENSCHAP00000011211	annotation not available	annotation not available	0.671
ENSCHAP00000009543	ENSCHAP00000057031	ENSCHAP00000009543	ENSCHAP00000057031	annotation not available	annotation not available	0.671
ENSCHAP00000009543	LOC105911849	ENSCHAP00000009543	ENSCHAP00000049127	annotation not available	Cytochrome c.	0.671
ENSCHAP00000009543	thyn1	ENSCHAP00000009543	ENSCHAP00000030168	annotation not available	Thymocyte nuclear protein 1.	0.725
ENSCHAP00000011211	ENSCHAP00000009543	ENSCHAP00000011211	ENSCHAP00000009543	annotation not available	annotation not available	0.671
ENSCHAP00000011211	ENSCHAP00000045160	ENSCHAP00000011211	ENSCHAP00000045160	annotation not available	annotation not available	0.406
ENSCHAP00000011211	ENSCHAP00000049557	ENSCHAP00000011211	ENSCHAP00000049557	annotation not available	SURF1 cytochrome c oxidase assembly factor.	0.671
ENSCHAP00000011211	LOC105900583	ENSCHAP00000011211	ENSCHAP00000036425	annotation not available	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like.	0.406
ENSCHAP00000011211	thyn1	ENSCHAP00000011211	ENSCHAP00000030168	annotation not available	Thymocyte nuclear protein 1.	0.750
ENSCHAP00000038876	ENSCHAP00000045160	ENSCHAP00000038876	ENSCHAP00000045160	annotation not available	annotation not available	0.958
ENSCHAP00000038876	LOC105900583	ENSCHAP00000038876	ENSCHAP00000036425	annotation not available	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like.	0.958
ENSCHAP00000038876	thyn1	ENSCHAP00000038876	ENSCHAP00000030168	annotation not available	Thymocyte nuclear protein 1.	0.652
ENSCHAP00000045160	ENSCHAP00000011211	ENSCHAP00000045160	ENSCHAP00000011211	annotation not available	annotation not available	0.406
ENSCHAP00000045160	ENSCHAP00000038876	ENSCHAP00000045160	ENSCHAP00000038876	annotation not available	annotation not available	0.958
ENSCHAP00000045160	ENSCHAP00000057031	ENSCHAP00000045160	ENSCHAP00000057031	annotation not available	annotation not available	0.406
ENSCHAP00000045160	LOC105893824	ENSCHAP00000045160	ENSCHAP00000041248	annotation not available	Uncharacterized protein At2g34460, chloroplastic-like.	0.958
ENSCHAP00000045160	LOC105911849	ENSCHAP00000045160	ENSCHAP00000049127	annotation not available	Cytochrome c.	0.406
ENSCHAP00000045160	blvrb	ENSCHAP00000045160	ENSCHAP00000007002	annotation not available	Biliverdin reductase B.	0.958
ENSCHAP00000045160	thyn1	ENSCHAP00000045160	ENSCHAP00000030168	annotation not available	Thymocyte nuclear protein 1.	0.862
ENSCHAP00000049557	ENSCHAP00000011211	ENSCHAP00000049557	ENSCHAP00000011211	SURF1 cytochrome c oxidase assembly factor.	annotation not available	0.671