STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000030459Peroxisome proliferator-activated receptor gamma, coactivator 1 beta. (910 aa)    
Predicted Functional Partners:
ENSCHAP00000022934
Mediator complex subunit 15.
     
 0.935
ENSCHAP00000001042
Mediator complex subunit 19a.
     
 0.928
med27
Mediator complex subunit 27.
     
 0.924
NCBP1
Nuclear cap binding protein subunit 1.
    
   0.906
esrra
Estrogen related receptor alpha.
    
 0.889
ENSCHAP00000020587
Sterol regulatory element binding transcription factor 2.
    
 0.881
ENSCHAP00000024302
Sterol regulatory element binding transcription factor 1.
    
 0.881
med23
Mediator complex subunit 23.
     
 0.865
ENSCHAP00000001613
MLX interacting protein.
     
 0.849
ENSCHAP00000011957
MLX interacting protein like.
     
 0.849
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.