STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam110bFamily with sequence similarity 110 member B. (416 aa)    
Predicted Functional Partners:
ENSCHAP00000039388
annotation not available
      
 0.537
ANKRD34A
Ankyrin repeat domain 34A.
      
 0.531
ENSCHAP00000041555
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils.
      
 0.528
ENSCHAP00000041537
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.
      
 0.527
ENSCHAP00000038146
Ankyrin repeat domain 49.
      
 0.526
ENSCHAP00000032105
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.522
ENSCHAP00000031490
Transmembrane protein 106A.
      
 0.519
ENSCHAP00000049030
Solute carrier family 2 member 12.
      
 0.431
tmem68
Transmembrane protein 68.
      
 0.418
nsfl1c
NSFL1 cofactor.
      
 0.408
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.