STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000030621Chromobox homolog 8b. (452 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.974
rnf2
Ring finger protein 2.
    
 0.974
ENSCHAP00000058832
Bmi1 polycomb ring finger oncogene 1b.
    
 0.959
ENSCHAP00000023066
Bmi1 polycomb ring finger oncogene 1a.
    
 0.957
pcgf2
Polycomb group ring finger 2.
    
 0.940
eed
Embryonic ectoderm development.
    
 0.931
ENSCHAP00000022383
annotation not available
    
 0.926
ENSCHAP00000045135
annotation not available
    
 0.926
ENSCHAP00000030693
annotation not available
    
0.923
LOC105891371
E3 SUMO-protein ligase CBX4-like.
    
0.923
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.