STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txnl1Thioredoxin like 1. (289 aa)    
Predicted Functional Partners:
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 
 0.981
cops5
COP9 signalosome subunit 5.
   
 
 0.929
psmc3
Proteasome 26S subunit, ATPase 3.
   
   0.808
ENSCHAP00000006174
Proteasome 26S subunit, non-ATPase 12.
   
 
 0.794
psmc6
Proteasome 26S subunit, ATPase 6.
   
   0.776
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
   0.761
mysm1
Myb like, SWIRM and MPN domains 1.
   
 
 0.745
ENSCHAP00000024796
BRCA1/BRCA2-containing complex, subunit 3.
   
 
 0.740
ENSCHAP00000061634
MPN domain containing.
   
 
 0.740
ENSCHAP00000039121
Protein phosphatase 1, regulatory subunit 42.
   
 
 0.739
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.