STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsnaxip1Translin associated factor X interacting protein 1. (666 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.961
ruvbl1
RuvB like AAA ATPase 1.
    
 0.839
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 0.825
ENSCHAP00000010935
M-phase phosphoprotein 8.
    
 0.823
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.823
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.823
ENSCHAP00000030788
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.822
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
   
 0.822
ino80c
INO80 complex subunit C.
    
 0.805
ENSCHAP00000059679
Actin related protein 5.
    
 0.786
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.