STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000031328Wolfram syndrome 1b (wolframin). (902 aa)    
Predicted Functional Partners:
ENSCHAP00000012328
annotation not available
    
 0.884
ENSCHAP00000017538
Activating transcription factor 6.
    
 0.883
ENSCHAP00000059649
Wolfram syndrome 1a (wolframin).
  
  
 
0.851
ENSCHAP00000049773
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.666
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.611
ENSCHAP00000040369
Sterile alpha motif domain containing 7.
     
 0.557
stox1
Storkhead box 1.
      
 0.514
ENSCHAP00000008443
Serine/arginine repetitive matrix 4.
      
 0.510
ENSCHAP00000019356
Usher syndrome 2A (autosomal recessive, mild).
      
 0.487
ENSCHAP00000059765
RPGRIP1 like.
      
 0.440
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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