STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105905103Cellular nucleic acid-binding protein-like. (164 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.811
LOC105890375
Heterogeneous nuclear ribonucleoprotein K-like.
   
  
 0.765
ENSCHAP00000054417
Heterogeneous nuclear ribonucleoprotein K.
   
  
 0.765
tent4a
Terminal nucleotidyltransferase 4A.
   
 0.698
ENSCHAP00000028382
Terminal nucleotidyltransferase 4B.
   
 0.698
rps3
Ribosomal protein S3.
   
 
 0.609
ENSCHAP00000060613
Mitochondrial rRNA methyltransferase 2.
   
 
 0.545
cct5
Chaperonin containing TCP1 subunit 5.
   
 
 0.543
ENSCHAP00000026783
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 0.539
ENSCHAP00000021984
Importin 7.
   
 0.529
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.