STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem147Transmembrane protein 147. (226 aa)    
Predicted Functional Partners:
tmco1
Transmembrane and coiled-coil domains 1.
   
 
 0.958
ncln
Nicalin.
    
 
 0.954
ccdc47
Coiled-coil domain containing 47.
    
 
 0.950
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.931
ENSCHAP00000060829
Zgc:109965.
    
 
 0.922
rpl11
Ribosomal protein L11.
   
 
 0.900
ENSCHAP00000040372
Lin-52 DREAM MuvB core complex component.
   
 0.898
ENSCHAP00000023537
Ribosomal protein L38.
    
   0.896
mrpl2
Mitochondrial ribosomal protein L2.
   
   0.883
rpl8
Ribosomal protein L8.
   
   0.883
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.