STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000031796SET binding factor 1. (1914 aa)    
Predicted Functional Partners:
ENSCHAP00000035778
Myotubularin related protein 1b.
   
0.817
ENSCHAP00000047243
Myotubularin 1.
   
0.817
ENSCHAP00000047682
Myotubularin related protein 1a.
   
0.817
rab21
RAB21, member RAS oncogene family.
    
 0.789
ENSCHAP00000024429
annotation not available
    
0.732
MTMR4
Myotubularin related protein 4.
    
0.732
ENSCHAP00000053512
annotation not available
    
0.732
FIG4
FIG4 phosphoinositide 5-phosphatase.
     
 0.718
CHML
Rab proteins geranylgeranyltransferase component A 2-like.
     
 0.644
ENSCHAP00000013195
Cyclin-dependent kinase 9 (CDC2-related kinase).
     
 0.633
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.