STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
l3hypdhtrans-L-3-hydroxyproline dehydratase. (345 aa)    
Predicted Functional Partners:
dao
D-amino acid oxidase.
    
 0.900
ENSCHAP00000021635
Zgc:172341.
    
 0.900
ENSCHAP00000044054
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
    
  0.861
ndufs1
NADH:ubiquinone oxidoreductase core subunit S1.
    
  0.846
ENSCHAP00000034046
Pyrroline-5-carboxylate reductase 3.
    
 0.846
NDUFS1
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like.
    
  0.846
ENSCHAP00000005369
NADP-dependent oxidoreductase domain containing 1.
    
 0.836
ENSCHAP00000012977
Pyrroline-5-carboxylate reductase 1a.
    
 0.836
tmed8
Transmembrane p24 trafficking protein family member 8.
    
 0.836
prodh2
Proline dehydrogenase 2.
    
 0.822
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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