STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105907489Ras-related protein Rab-40B-like. (292 aa)    
Predicted Functional Partners:
CHML
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.808
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.798
wdr6
WD repeat domain 6.
   
    0.761
ASF1B
Anti-silencing function 1B histone chaperone.
   
    0.755
utp15
UTP15 small subunit processome component.
   
    0.751
ENSCHAP00000037221
RAB3A interacting protein (rabin3)-like 1.
    
 0.748
ENSCHAP00000059265
RAB3A interacting protein (rabin3).
    
 0.748
ENSCHAP00000040963
SET domain containing 3, actin histidine methyltransferase.
   
    0.738
ENSCHAP00000042434
Rab interacting lysosomal protein-like 2.
    
 
 0.729
ENSCHAP00000048980
annotation not available
    
 
 0.718
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.