STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000032014annotation not available (137 aa)    
Predicted Functional Partners:
ENSCHAP00000000456
annotation not available
   
 0.999
trip12
Thyroid hormone receptor interactor 12.
   
 0.973
ENSCHAP00000054339
annotation not available
    
 0.913
ENSCHAP00000030857
annotation not available
   
 0.881
rps27a
Ribosomal protein S27a.
   
 0.862
ENSCHAP00000062823
Baculoviral IAP repeat containing 6.
   
 0.859
ENSCHAP00000045730
Zinc finger, AN1-type domain 4.
   
 0.856
ENSCHAP00000009160
RAN binding protein 2.
   
 0.845
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
    
 0.834
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
 0.830
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.