STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105907293Putative methyltransferase DDB_G0268948. (271 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.761
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.747
ENSCHAP00000010211
Sigma non-opioid intracellular receptor 1.
   
 0.721
hsd17b7
Hydroxysteroid 17-beta dehydrogenase 7.
    
 0.717
tsr1
TSR1 ribosome maturation factor.
   
  0.679
ENSCHAP00000002247
Mitochondrial ribosomal protein S5.
    
 0.672
rps2
Ribosomal protein S2.
    
 0.672
bysl
Bystin like.
   
 0.650
rps7
Ribosomal protein S7.
    
  0.638
ENSCHAP00000040378
Ribosomal protein S3A.
   
  0.638
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.