STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000032559Zic family member 2 (odd-paired homolog, Drosophila) b. (425 aa)    
Predicted Functional Partners:
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
mysm1
Myb like, SWIRM and MPN domains 1.
   
  0.558
ENSCHAP00000049610
annotation not available
    
 0.535
ENSCHAP00000058691
NME/NM23 family member 8.
    
 0.535
ENSCHAP00000042821
General transcription factor IIIC, polypeptide 3.
    
 0.527
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.525
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
  0.518
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.512
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
  0.508
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.