STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogfod22-oxoglutarate and iron dependent oxygenase domain containing 2. (350 aa)    
Predicted Functional Partners:
LOC105889441
Procollagen galactosyltransferase 2-like.
   
 0.654
ENSCHAP00000037047
annotation not available
   
 0.654
ENSCHAP00000044573
annotation not available
   
 0.654
cercam
Cerebral endothelial cell adhesion molecule.
   
 0.654
ENSCHAP00000055441
Collagen beta(1-O)galactosyltransferase 1.
   
 0.654
MOSMO
Uncharacterized protein C16orf52 homolog B.
   
 0.654
ENSCHAP00000061360
Collagen beta(1-O)galactosyltransferase 2.
   
 0.654
ENSCHAP00000006386
Nuclear receptor binding SET domain protein 3.
    
 0.641
ENSCHAP00000049677
Nuclear receptor binding SET domain protein 2.
    
 0.641
LOC105905089
N-lysine methyltransferase SETD8-A-like.
    
 0.635
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.