STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000032797Potassium voltage-gated channel, shaker-related subfamily, beta member 1 a. (413 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
   
 0.908
ENSCHAP00000014546
Nucleoporin 107.
   
 0.904
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.895
seh1l
SEH1 like nucleoporin.
    
 0.871
nup85
Nucleoporin 85.
    
 0.870
kcnv1
Potassium voltage-gated channel modifier subfamily V member 1.
    
 0.798
LOC105901444
Potassium voltage-gated channel subfamily F member 1-like.
    
 0.783
LOC105895550
Potassium voltage-gated channel subfamily F member 1-like.
    
 0.783
kcng1
Potassium voltage-gated channel modifier subfamily G member 1.
    
 0.779
ENSCHAP00000040943
Si:dkey-43k4.5.
    
 0.773
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.